PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.79EIQ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 101aa    MW: 11767.5 Da    PI: 6.8972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.79EIQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-055882123
                 EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                 + C+   Cgk F  +s LkrH   H
  Aradu.79EIQ 58 FICHyeGCGKKFLERSKLKRHFLIH 82
                 78*******************8877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-92453IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.6832958IPR007087Zinc finger, C2H2
SMARTSM00355652953IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.66E-53053No hitNo description
SuperFamilySSF576676.29E-95394No hitNo description
Gene3DG3DSA:3.30.160.608.0E-135578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0075882IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1335887IPR007087Zinc finger, C2H2
PROSITE patternPS0002806082IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-57995IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
EDALKALQEK EKVPAIPEPE PEPTTEVLFL CNYEGCGKMF IDAGALRKYS PIHEERQFIC  60
HYEGCGKKFL ERSKLKRHFL IHTRESNFIC PREGYGKYDN C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-132297272PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930779.13e-45PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L33e-32Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A022QG142e-44A0A022QG14_ERYGU; Uncharacterized protein
STRINGSolyc03g083310.2.14e-43(Solanum lycopersicum)
STRINGPGSC0003DMT4000234593e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.26e-31C2H2 family protein